The file format is based on XML and HDF5. This permits browsing to any location within a multi-terabyte recording in a fraction of a second. In a multi-angle, multi-channel SPIM sequence, each channel of each angle is a source.īigDataViewer comes with a custom data format that is is optimized for fast random access to very large data sets. For example, in a multi-angle SPIM sequence, each angle is a source. Each source provides one 3D image (for each time-point in the case of a time-lapse sequence). BigDataViewer was developed with multi-view light-sheet microscopy data in mind and integrates well with Fiji’s SPIMage processing pipeline.Ĭonceptually, the visualized data comprises multiple data sources. The BigDataViewer is a re-slicing browser for terabyte-sized multi-view image sequences. If you’d like to help, check out the how to help guide! Description
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